Recently, production of genetically modified animals using a genome editing system such as CRISPR/Cas9 has been useful for modifying various species including rats. Such genetically modified rats can be preserved as germ cells to reduce the costs of maintenance of live animals. Vitrification of preimplantation embryos is valuable for many researchers. However, it is known that rat embryos are sensitive to physiological and physical stress and further improvement of the vitrification protocol is required. In this study, we examined whether a new cryoprotective agent (CPA), carboxylated ε-poly-L-lysine (COOH-PLL), is suitable for vitrification of rat embryos from the pronuclear to blastocyst stages in a minimal volume cooling protocol. Our results show that most of the embryos vitrified with ethylene glycol and COOH-PLL survived and developed to the blastocyst. After the transfer of vitrified embryos, the survival rate to term was similar to that of fresh embryos. We conclude that our vitrification protocol is suitable for rat embryos.